>> Promoter Search

 Sites for prediction promoters and related features

   - Promoter Prediction  : Predicts transcription start sites

   - Promoter 2.0 : Prediction of transcription start sites for vertebrate PolII promoters in DNA

      sequences

   - Promoter Scan : Prediction of promoter regions based on scoring homologies with putative

      eukaryotic Pol II promoter sequences

   - PLACE : A database of plant cis-acting regulatory DNA elements

   - Proscan : Predicts Pol II promoter sequences based on transcription factor binding sites

   - Signal Scan :  Find and list homologies of published signal sequences with the input DNA

      sequence

 Predicting Transcription Factor Binding Sites based on TRANSFAC database

   - TESS  : (Transcription Element Search Software)  See also Jonathan Schug's homepage

   - TRANSFAC : The transcription factor database (has several programs for searching sequences

      for transcription factor sites). See also TRANSFAC project

   - Ali Baba : Prediction of transcription factor binding sites from an automatically constructed

      library derived from TRANSFAC. See also Niels Grabe's homepage

   - TFSEARCH : Predicts transcription factor binding sites in nucleotide sequences by comparing

      your query sequence with a transcription factor binding site profiles database (TRANS FAC)

 Other transcription factor sites

   - RegulonDB : a database on transcriptional regulation in Escherichia coli

   - Dnanalyze : Transcription factor mapping