|
|
|
|
|
|
|
|
>> Motif Search |
|
|
|
|
|
Motif databases and Search against motif DB with a sequence as a query |
|
|
- PROSITE (1) : PROSITE database search (pattern search). - BLOCKS search : Block collection by MOTIF algorithm for the families in PROSITE. - IMPLA search : Search BLOCKS with a sequence - PRINTS: Block collection made from protein sequence database. - ProfileScan : Profile-type motif database search. - Emotif Search : Protein motif database made by EMOTIF. - EMATRIX searcher : PSSM collection from DBs with blocks. - Pfam : HMM collection of protein families. - PRODOM : Protein domain database. |
|
|
|
|
|
Motif Maker
|
|
|
- BLOCK Maker : Makes blocks from unaligned sequence set by MOTIF & GIBBS - BLOCK Maker (BCM Search Launcher ) : Another Block maker site... - PRATT : Extracting PROSITE type patterns from unaligned sequence set. - EMOTIF : Extracting motifs by EMOTIF algorithm from aligned sequence set. - EMATRIX maker : Extracting PSSM by EMATRIX algorithm from aligned sequence set. - MEME : Makes profile-type motif by MEME algorithm from ulaligned sequence set -
TEIRESIAS
:
Extracting
maximal
pattern
by
TEIRESIAS. |
|
|
|
|
|
Search against sequence DB with a
motif as a query |
|
|
- PSI-BLAST : Position Specific Iterated BLAST. - Phi-BLAST : Pattern Hit Initiated BLAST. - MAST : Search with motifs made by MEME. - EMOTIF SCAN : Search with motifs made by EMOTIF. - EMATRIX SCAN : Search with a PSSM motif -
Meta-MEME
:
Search
with
a
Meta-Meme. |
|
|
|
|
|
Motif DB search with a motif |
|
- LAMA : Search against BLOCKS database with a multiple alignment. |
|
|
|
|
|
Multiple
alignment
servers |
|
|
- DIALIGN2 : Multiple Alignment by DIALIGN2 - CLUSTALW : BCM search launcher -
MAP
:
Linear
Space
Multiple
Alignment
(
Similairty
based
) |
|
|
|
|
|
Other
Information |
|
|
|
The Baylor College of Medicine Search Launcher is an on-going project to organize molecular biology-related search and analysis services available on the WWW by function by providing a single point-of-entry for related searches (e.g., a single page for launching protein sequence searches using standard parameters) Tree drawing software. PHYLIP is a free package of programs for inferring phylogenies. It is distributed as source code, documentation files, and a number of different types of executables. - Protein Structure Prediction Homology modelling(Swiss Model, CPHmodels),Threading(Bioinbgu, SAM-T99), Secondary structure prediction(PHD/PROF), Transmembrane helix prediction, and others => Meta Server Predicts
many
things
on
a
protein. |
|
|
|
|
|
|
